| Pathogen |
Catalogue Ref. |
Nº |
Genome |
| Acanthamoeba spp. |
AcaSpp |
341 |
DNA |
| Acinetobacter baumannii |
AciBau |
035 |
DNA |
| Actinobacillus pleuropneumoniaeApx IV toxin |
ActPle-ApxIV |
369 |
DNA |
| Actinomortierella wolfii |
ActWol |
336 |
DNA |
| Aeromonas spp. |
AerSpp |
026 |
DNA |
| Aeromonas veronii |
AerVer |
436 |
DNA |
| African horse sickness virus |
AHSV |
101 |
RNA |
| African swine fever virus |
ASFV |
040 |
DNA |
| Aggregatibacter actinomycetemcomitans |
AggAct |
074 |
DNA |
| Aleutian mink disease virus |
AMDV |
294 |
DNA |
| Alicyclobacillus acidoterrestris |
AliAci |
187 |
DNA |
| Alpha toxin of Clostridium perfringens |
Alpha-CloPer |
121 |
DNA |
| Alternaria alternata |
AltAlt |
251 |
DNA |
| Alternaria cucumerina |
AltCuc |
253 |
DNA |
| Anaplasma phagocytophilum |
AnaPha |
008 |
DNA |
| Anaplasma spp. |
AnaSpp |
213 |
DNA |
| Arcobacter spp. |
ArcSpp |
120 |
DNA |
| Aspergillus flavus |
AspFla |
140 |
DNA |
| Aspergillus fumigatus |
AspFum |
139 |
DNA |
| Aspergillus niger |
AspNig |
141 |
DNA |
| Aspergillus spp. |
AspSpp |
036 |
DNA |
| Avastrovirus 1 |
AAstV-1 |
385 |
RNA |
| Avian hepatitis E virus |
AHEV |
056 |
RNA |
| Avian infectious bronchitis virus |
AIBV |
065 |
RNA |
| Avian influenza type A virus |
AIAV |
033 |
RNA |
| Avian influenza type A virus subtype H1 |
AIAV-H1 |
323 |
RNA |
| Avian influenza type A virus subtype H3 |
AIAV-H3 |
324 |
RNA |
| Avian influenza type A virus subtype H5 |
AIAV-H5 |
109 |
RNA |
| Avian influenza type A virus subtype H7 |
AIAV-H7 |
082 |
RNA |
| Avian influenza type A virus subtype H9 |
AIAV-H9 |
083 |
RNA |
| Avian influenza type A virus subtype N1 |
AIAV-N1 |
284 |
RNA |
| Avian influenza type A virus subtype N2 |
AIAV-N2 |
279 |
RNA |
| Avian influenza type A virus subtype N2 (H9N2-like) |
AIAV-N2 (H9N2-like) |
319 |
RNA |
| Avian influenza type A virus subtype N8 |
AIAV-N8 |
411 |
RNA |
| Avian influenza type A virus subtype N9 |
AIAV-N9 |
281 |
RNA |
| Avian metapneumovirus subgroup A |
AMPV-A |
426 |
RNA |
| Avian metapneumovirus subgroup B |
AMPV-B |
427 |
RNA |
| Avian metapneumovirus subgroup C |
AMPV-C |
280 |
RNA |
| Avian metapneumovirus subgroup D |
AMPV-D |
428 |
RNA |
| Avian polyomavirus |
APV |
164 |
DNA |
| Avian reovirus |
ARV |
037 |
RNA |
| Avibacterium paragallinarum |
AviPar |
417 |
DNA |
| Babesia caballi |
BabCab |
016 |
DNA |
| Babesia gibsoni |
BabGib |
382 |
DNA |
| Babesia spp. |
BabSpp |
214 |
DNA |
| Babesia vulpes |
BabVul |
383 |
DNA |
| Babesiosis canina |
BabCan |
001 |
DNA |
| Bacillus amyloliquefaciens |
BacAmy |
097 |
DNA |
| Bacillus anthracis |
BacAnt |
235 |
DNA |
| Bacillus cereus |
BacCer |
229 |
DNA |
| Bacillus licheniformis |
BacLic |
335 |
DNA |
| Bacteroides fragilis |
BacFra |
246 |
DNA |
| Bartonella henselae |
BarHen |
248 |
DNA |
| Bartonella spp. cluster 1 |
BarSpp-1 |
407 |
DNA |
| Beak and feather disease virus |
BFDV |
388 |
DNA |
| Beta toxin of Clostridium perfringens |
Beta-CloPer |
129 |
DNA |
| Bibersteinia trehalosi |
BibTre |
275 |
DNA |
| Bifidobacterium spp. |
BifSpp |
295 |
DNA |
| BK virus |
BKV |
087 |
DNA |
| Bluetongue virus |
BTV |
269 |
RNA |
| Borrelia burgdorferi |
BorBur |
212 |
DNA |
| Borrelia spp. |
BorSpp |
400 |
DNA |
| Bovine coronavirus |
BCoV |
061 |
RNA |
| Bovine ephemeral fever virus |
BEFV |
060 |
RNA |
| Bovine herpesvirus 1 |
BoHV-1 |
042 |
DNA |
| Bovine herpesvirus 2 |
BoHV-2 |
260 |
DNA |
| Bovine leukemia virus |
BLV |
149 |
RNA |
| Bovine respiratory syncytial virus |
BRSV |
180 |
RNA |
| Bovine rotavirus A |
BRVA |
435 |
RNA |
| Bovine viral diarrohea virus-Border disease virus |
BVDV-BDV |
178 |
RNA |
| Brachyspira hyodysenteriae |
BraHyo |
152 |
DNA |
| Brachyspira intermedia |
BraInt |
396 |
DNA |
| Brachyspira murdochii |
BraMur |
395 |
DNA |
| Brachyspira pilosicoli |
BraPil |
174 |
DNA |
| Brucella abortus |
BruAbo |
439 |
DNA |
| Brucella spp. |
BruSpp |
217 |
DNA |
| Burkholderia mallei |
BurMal |
393 |
DNA |
| Camelpox virus |
CMLV |
126 |
DNA |
| Campylobacter coli |
CamCol |
122 |
DNA |
| Campylobacter fetus |
CamFet |
181 |
DNA |
| Campylobacter fetus subsp. venerealis |
CamFetVen |
052 |
DNA |
| Campylobacter hepaticus |
CamHep |
331 |
DNA |
| Campylobacter jejuni |
CamJej |
057 |
DNA |
| Campylobacter spp. |
CamSpp |
170 |
DNA |
| Candida albicans |
CanAlb |
234 |
DNA |
| Candida auris |
CanAur |
216 |
DNA |
| Canine and feline parvoviruses |
CPV-2-FPLV |
221 |
DNA |
| Canine distemper virus |
CDV |
012 |
RNA |
| Canine herpesvirus 1 |
CHV-1 |
165 |
DNA |
| Caprine arthritis encephalitis provirus |
CAEVp |
219 |
DNA |
| Caprine arthritis encephalitis virus |
CAEV |
219 |
RNA |
| Capripoxvirus |
CPPV |
086 |
DNA |
| Catonella spp. |
CatSpp |
351 |
DNA |
| Cell-free human DNA |
cfhDNA |
137 |
DNA |
| Chicken anemia virus |
CAV |
420 |
DNA |
| Chlamydia abortus |
ChlAbo |
133 |
DNA |
| Chlamydia felis, C. psittaci, C. abortus |
Chl3Sp |
011 |
DNA |
| Chlamydia pecorum |
ChlPec |
204 |
DNA |
| Chlamydia psittaci |
ChlPsi |
389 |
DNA |
| Chlamydia spp. |
ChlSpp |
398 |
DNA |
| Chlamydia suis |
ChlSui |
134 |
DNA |
| Citrus exocortis viroid |
CEVd |
113 |
RNA |
| Citrus psorosis virus phylotype 1 |
CPsV-ph1 |
115 |
RNA |
| Citrus psorosis virus phylotype 2 |
CPsV-ph2 |
115 |
RNA |
| Citrus psorosis virus phylotype 1+2 – TwoTarget |
CPsV-ph1+2 – 2T |
115 |
RNA |
| Citrus tristeza virus |
CTV |
114 |
RNA |
| Classical swine fever virus |
CSFV |
041 |
RNA |
| Clavibacter michiganensis |
ClaMic |
256 |
DNA |
| Clostridium difficile |
CloDif |
371 |
DNA |
| Clostridium perfringens |
CloPer |
121 |
DNA |
| Clostridium spp. |
CloSpp |
231 |
DNA |
| Coxiella burnetii |
CoxBur |
169 |
DNA |
| Crimean–Congo haemorrhagic fever virus |
CCHFV |
283 |
RNA |
| Cronobacter sakazakii |
CroSak |
285 |
DNA |
| Cryptococcus neoformans/gattii |
CryNeoGat |
338 |
DNA |
| Cryptosporidium spp. |
CrySpp |
148 |
DNA |
| Cytauxzoon spp. |
CytSpp |
322 |
DNA |
| Dengue virus |
DENV |
409 |
RNA |
| Dermanyssus gallinae |
DerGal |
414 |
DNA |
| Dirofilaria immitis |
DirImm |
316 |
DNA |
| Dobrava-Belgrade virus |
DOBV |
023 |
RNA |
| Dreissena polymorpha |
DrePol |
249 |
DNA |
| Eastern equine encephalitis virus |
EEEV |
031 |
RNA |
| Ebola virus |
EBOV |
090 |
RNA |
| Egg drop syndrome virus |
EDSV |
027 |
DNA |
| Ehrlichia spp. |
EhrSpp |
047 |
DNA |
| Entamoeba gingivalis |
EntGin |
355 |
DNA |
| Entamoeba spp. |
EntbSpp |
354 |
DNA |
| Enterococcus cecorum |
EntCec |
415 |
DNA |
| Enterococcus spp. |
EntSpp |
232 |
DNA |
| Epizootic hemorrhagic disease virus |
EHDV |
438 |
RNA |
| Epsilon toxin of Clostridium perfringens |
Epsilon-CloPer |
130 |
DNA |
| Epstein-Barr virus |
EBV |
329 |
DNA |
| Equine |
Equine |
096 |
DNA |
| Equine arteritis virus |
EAV |
318 |
RNA |
| Equine herpesvirus 1 |
EHV-1 |
102 |
DNA |
| Equine herpesvirus 3 |
EHV-3 |
162 |
DNA |
| Equine herpesvirus 4 |
EHV-4 |
103 |
DNA |
| Equine infectious anemia virus |
EqIAV |
394 |
RNA |
| Equine influenza A virus (H3N8 & H7N7) |
EIAV |
166 |
RNA |
| Erysipelothrix rhusiopathiae |
EryRhu |
203 |
DNA |
| Escherichia coli |
EscCol |
058 |
DNA |
| Escherichia coli Heat-stable toxin B |
EscCol-HSTB |
367 |
DNA |
| Escherichia coli O157:H7 |
ECO157 |
025 |
DNA |
| Escherichia coli Porcine Heat-stable toxin A |
EscCol-pHSTA |
366 |
DNA |
| Feline calicivirus |
FCV |
266 |
RNA |
| Feline coronavirus |
FCoV |
017 |
RNA |
| Feline herpesvirus 1 |
FHV-1 |
010 |
DNA |
| Feline immunodeficiency provirus |
FIVp |
202 |
DNA |
| Feline immunodeficiency virus |
FIV |
202 |
RNA |
| Feline infectious peritonitis virus |
FIPV |
222 |
RNA |
| Feline leukemia provirus |
FeLVp |
218 |
DNA |
| Feline leukemia virus |
FeLV |
218 |
RNA |
| Foot-and-mouth disease virus |
FMDV |
142 |
RNA |
| Foot-and-mouth disease virus type A |
FMDV-A |
066 |
RNA |
| Foot-and-mouth disease virus type ASIA1 |
FMDV-ASIA1 |
068 |
RNA |
| Foot-and-mouth disease virus type C |
FMDV-C |
067 |
RNA |
| Foot-and-mouth disease virus type O |
FMDV-O |
064 |
RNA |
| Foot-and-mouth disease virus type SAT1 |
FMDV-SAT1 |
069 |
RNA |
| Foot-and-mouth disease virus type SAT2 topotype XIV |
FMDV-SAT-2-XIV |
397 |
RNA |
| Foot-and-mouth disease virus type SAT3 |
FMDV-SAT3 |
071 |
RNA |
| Fowl aviadenovirus A |
FAdV-A |
265 |
DNA |
| Francisella tularensis |
FraTul |
399 |
DNA |
| Fretibacterium spp. |
FreSpp |
352 |
DNA |
| Fusarium oxysporum |
FusOxy |
252 |
DNA |
| Fusobacterium nucleatum |
FusNuc |
079 |
DNA |
| Gallibacterium anatis |
GalAna |
028 |
DNA |
| Gallid alphaherpesvirus 1 |
GaHV-1 |
418 |
DNA |
| Gallid herpesvirus 2 |
GaHV-2 |
107 |
DNA |
| Giardia intestinalis |
GiaInt |
143 |
DNA |
| Gluten |
Gluten |
296 |
DNA |
| Goatpox virus |
GTPV |
227 |
DNA |
| Haemonchus contortus |
HaeCon |
278 |
DNA |
| Haemophilus parasuis |
HaePar |
205 |
DNA |
| Helicobacter pylori |
HelPyl |
175 |
DNA |
| Hepatitis A virus |
HAV |
309 |
RNA |
| Hepatitis B virus |
HBV |
088 |
DNA |
| Hepatitis C virus |
HCV |
072 |
RNA |
| Hepatitis delta virus |
HDV |
098 |
RNA |
| Hepatitis E virus |
HEV |
055 |
RNA |
| Hepatozoon spp. |
HepSpp |
099 |
DNA |
| Herpes simplex virus 1 |
HSV-1 |
044 |
DNA |
| Herpes simplex virus 2 |
HSV-2 |
044 |
DNA |
| Herpes simplex virus 1+2 – TwoTarget |
HSV-1+2 – 2T |
044 |
DNA |
| Histophilus somni |
HisSom |
258 |
DNA |
| Human adenovirus F |
HAdF |
006 |
DNA |
| Human bocavirus 1 |
HBoV-1 |
292 |
DNA |
| Human cytomegalovirus |
HCMV |
089 |
DNA |
| Human herpesvirus 6 |
HHV-6 |
091 |
DNA |
| Human immunodeficiency virus 1 |
HIV-1 |
328 |
RNA |
| Human immunodeficiency virus 2 |
HIV-2 |
277 |
RNA |
| Human Influenza type A virus |
HIAV |
301 |
RNA |
| Human Influenza type A and B virus |
HIAV+HIBV |
301.302 |
RNA |
| Human Influenza type B virus |
HIBV |
302 |
RNA |
| Human parvovirus B19 |
HParV-B19 |
100 |
DNA |
| Human respiratory syncytial virus A |
HRSV-A |
339 |
RNA |
| Human respiratory syncytial virus A/B |
HRSV-A/B |
339.340 |
RNA |
| Human respiratory syncytial virus B |
HRSV-B |
340 |
RNA |
| Human T-lymphotropic virus type 1 |
HTLV-1 |
059 |
RNA |
| Infectious bursal disease virus |
IBDV |
300 |
RNA |
| Infectious salmon anemia virus |
ISAV |
128 |
RNA |
| Interleukin 6 Chicken |
IL-6 Chicken |
293 |
mRNA |
| Iota toxin of Clostridium perfringens |
Iota-CloPer |
131 |
DNA |
| JC polyomavirus |
JCPyV |
386 |
RNA |
| Kingella kingae |
KinKin |
434 |
DNA |
| Klebsiella pneumoniae |
KlePne |
182 |
DNA |
| Lawsonia intracellularis |
LawInt |
157 |
DNA |
| Legionella pneumophila |
LegPne |
054 |
DNA |
| Legionella pneumophila serotype 1 |
LegPne-1 |
412 |
DNA |
| Legionella spp. |
LegSpp |
002 |
DNA |
| Leishmania infantum (Leishmania donovani complex) |
LeiInf |
387 |
DNA |
| Leishmania spp. |
LshSpp |
021 |
DNA |
| Leptospira interrogans |
LepInt |
176 |
DNA |
| Leptospira spp. |
LepSpp |
005 |
DNA |
| Listeria innocua |
LisInn |
223 |
DNA |
| Listeria ivanovii |
LisIva |
334 |
DNA |
| Listeria monocytogenes |
LisMon |
004 |
DNA |
| Lumpy skin disease virus |
LSDV |
046 |
DNA |
| Macrorhabdus ornithogaster |
MacOrn |
239 |
DNA |
| Maedi-Visna virus |
MVV |
211 |
RNA |
| Maize-35S – Duplex |
Maize-35S – Dx |
093 |
DNA |
| Mammals |
Mammals |
095 |
DNA |
| Mannheimia haemolytica |
ManHae |
274 |
DNA |
| Measles morbillivirus |
MeV |
410 |
RNA |
| Methicillin resistance gene |
MRG |
019 |
DNA |
| Methicillin resistant Staphylococcus aureus – TwoTarget |
MRSA – 2T |
019/020 |
DNA |
| Microcystine toxin gene mcyB |
mcyB-tox |
373 |
DNA |
| Microcystine toxin gene mcyE |
mcyE-tox |
374 |
DNA |
| Middle East respiratory syndrome coronavirus |
MERS-CoV |
085 |
RNA |
| Monilinia fructicola |
MonFru |
288 |
DNA |
| Monilinia fructigena |
MonFrg |
290 |
DNA |
| Monilinia laxa |
MonLax |
289 |
DNA |
| Monilinia polystroma |
MonPol |
291 |
DNA |
| Monkeypox virus |
MPXV |
345 |
DNA |
| Monocopy cell-free human DNA |
m-cfhDNA |
136 |
DNA |
| MON810 |
MON810 |
063 |
DNA |
| Moraxella bovis |
MorBov |
267 |
DNA |
| Moraxella bovoculi |
MorBovc |
268 |
DNA |
| Mouse mammary tumor virus |
MMTV |
045 |
RNA |
| Mycobacterium abscessus |
MycbAbs |
349 |
DNA |
| Mycobacterium avium |
MycbAvi |
363 |
DNA |
| Mycobacterium avium subsp. paratuberculosis |
MAP |
330 |
DNA |
| Mycobacterium intracellulare subsp.chimaera |
MycbChi |
350 |
DNA |
| Mycobacterium leprae |
MycbLep |
163 |
DNA |
| Mycobacterium spp. |
MycbSpp |
238 |
DNA |
| Mycobacterium tuberculosis complex |
MTplex |
015 |
DNA |
| Mycobacterium tuberculosis variant bovis |
MycbBov |
183 |
DNA |
| Mycoplasma agalactiae |
MycAga |
159 |
DNA |
| Mycoplasma capricolum |
MycCap |
160 |
DNA |
| Mycoplasma conjunctivae |
MycCon |
240 |
DNA |
| Mycoplasma gallisepticum |
MycGal |
038 |
DNA |
| M.gallisepticum and M.gallisepticum vaccine strain 6/85 – Duplex |
MycGal-Mg 6/85 – Dx |
038/104 |
DNA |
| Mycoplasma gallisepticum vacunal 6/85 |
Mg 6/85 |
104 |
DNA |
| Mycoplasma haemotoparvum (Candidatus) |
MycHamp |
381 |
DNA |
| Mycoplasmas Haemo Group |
MycHG |
321 |
DNA |
| Mycoplasma haemofelis/haemocanis |
MycHae |
119 |
DNA |
| Mycoplasma haematoparvum (Candidatus) |
MycHamp |
381 |
DNA |
| Mycoplasma haemolamae (Candidatus) |
MycHaem |
243 |
DNA |
| Mycoplasma haemominutum (Candidatus) |
MycHamm |
379 |
DNA |
| Mycoplasma hyopneumoniae |
MycHyop |
270 |
DNA |
| Mycoplasma hyorhinis |
MycHrh |
206 |
DNA |
| Mycoplasma hyosynoviae |
MycHyo |
173 |
DNA |
| Mycoplasma mycoides |
MycMyc |
158 |
DNA |
| Mycoplasma ovipneumoniae |
MycOvi |
276 |
DNA |
| Mycoplasma pneumoniae |
MycPne |
262 |
DNA |
| Mycoplasma putrefaciens |
MycPut |
161 |
DNA |
| Mycoplasma spp. cluster 1 |
MycpSpp-1 |
237 |
DNA |
| Mycoplasma suis |
MycSui |
207 |
DNA |
| Mycoplasma synoviae |
MycSyn |
310 |
DNA |
| Mycoplasma turicensis (Candidatus) |
MycTur |
380 |
DNA |
| Mycoplasmopsis bovis |
MycBov |
368 |
DNA |
| Neisseria gonorrhoeae |
NeiGon |
342 |
DNA |
| Neoehrlichia mikurensis (Candidatus) |
NeoMik |
404 |
DNA |
| Neospora caninum |
NeoCan |
200 |
DNA |
| Neospora spp. |
NeoSpp |
215 |
DNA |
| Newcastle disease virus |
NDV |
018 |
RNA |
| Nipah virus |
NiV |
259 |
RNA |
| ORF virus |
ORFV |
146 |
DNA |
| Orthobornavirus alphapsittaciforme |
OrtBV-AlphaPsi |
390 |
RNA |
| Orthobornavirus betapsittaciforme |
OrtBV-BetaPsi |
391 |
RNA |
| Ovine herpesvirus 2 |
OvHV-2 |
014 |
DNA |
| Pasteurella multocida |
PasMul |
224 |
DNA |
| Peste-des-petits-ruminants virus |
PPRV |
124 |
RNA |
| Phytophthora infestans |
PhyInf |
254 |
DNA |
| Plasmodium spp. |
PlaSpp |
314 |
DNA |
| Porcine circovirus type 2 |
PCV-2 |
156 |
DNA |
| Porcine circovirus type 3 |
PCV-3 |
303 |
DNA |
| Porcine epidemic diarrhoea virus |
PEDV |
154 |
RNA |
| Porcine parvovirus 1 |
PPV-1 |
208 |
DNA |
| Porcine reproductive and respiratory syndrome virus type 1 |
PRRSV-1 |
153 |
RNA |
| Porcine reproductive and respiratory syndrome virus type 2 |
PRRSV-2 |
245 |
RNA |
| Porphyromonas gingivalis |
PorGin |
075 |
DNA |
| Prevotella intermedia |
PreInt |
076 |
DNA |
| Prevotella-Alloprevotella spp. |
Pre-All |
344 |
DNA |
| Pseudomonas aeruginosa |
PseAer |
081 |
DNA |
| Pseudomonas syringae |
PseSyr |
257 |
DNA |
| Puumala virus |
PUUV |
022 |
RNA |
| Rabies virus |
RABV |
320 |
RNA |
| Ralstonia solanacearum |
RalSol |
286 |
DNA |
| Reticuloendotheliosis virus |
REV |
112 |
RNA |
| Rhodococcus equi |
RhoEqu |
360 |
DNA |
| Rickettsia spp. |
RicSpp |
039 |
DNA |
| Riemerella anatipestifer |
RieAna |
029 |
DNA |
| Rift valley fever virus |
RVFV |
116 |
RNA |
| Rotavirus type A |
RVA |
155 |
RNA |
| Rubella virus |
RuV |
261 |
RNA |
| Ruminococcus gnavus |
RumGna |
346 |
DNA |
| Salmonella enterica subsp. enterica serovar Choleraesuis |
SalChsu |
365 |
DNA |
| Salmonella enterica subsp. enterica serovar Enteritidis |
SalTidis |
337 |
DNA |
| Salmonella enterica subsp. enterica serovar Paratyphi A |
SalPar-A |
108 |
DNA |
| Salmonella enterica subsp. enterica serovar Typhimurium |
SalTypm |
132 |
DNA |
| Salmonella spp. |
SalSpp |
003 |
DNA |
| SARS-CoV-2 Environment – TwoTarget |
SARS-CoV-2 ENV – 2T |
306/305 |
RNA |
| Schmallenberg virus |
SBV |
043 |
RNA |
| Severe acute respiratory syndrome coronavirus |
SARS-CoV |
298 |
RNA |
| Sheeppox virus |
SPPV |
127 |
DNA |
| Shiga toxin 1 Escherichia coli |
Stx1-Ecoli |
167 |
DNA |
| Shiga toxin 2 Escherichia coli |
Stx2-Ecoli |
168 |
DNA |
| Shigella spp. |
ShiSpp |
236 |
DNA |
| Soy-35S – Duplex |
Soy-35S – Dx |
094 |
DNA |
| Spiroplasma citri |
SpiCit |
106 |
DNA |
| Staphylococcus aureus |
StaAur |
020 |
DNA |
| Staphylococcus epidermidis |
StaEpi |
151 |
DNA |
| Streptococcus agalactiae |
StrAga |
228 |
DNA |
| Streptococcus equi subsp. equi |
StrEquEqu |
357 |
DNA |
| Streptococcus equi subsp. zooepidemicus |
StrEquZoo |
242 |
DNA |
| Streptococcus pyogenes |
StrPyo |
406 |
DNA |
| Streptococcus spp. |
StrSpp |
233 |
DNA |
| Streptococcus suis |
StrSui |
370 |
DNA |
| Strongylus vulgaris |
StrVul |
317 |
DNA |
| Suid herpesvirus 1 |
SuHV-1 |
244 |
DNA |
| Swine H1N1 influenza A virus |
SIV-H1N1 |
179 |
RNA |
| Swine influenza A virus (H1N1, H3N2 and H1N2) |
SIV |
172 |
RNA |
| Tannerella forsythia |
TanFor |
077 |
DNA |
| Taylorella equigenitalis |
TayEqu |
150 |
DNA |
| Tenacibaculum dicentrarchi |
TenDic |
353 |
DNA |
| Tetragenococcus muriaticus |
TetMur |
401 |
DNA |
| Theileria annulata |
TheAnn |
425 |
DNA |
| Theileria equi |
TheEqu |
013 |
DNA |
| Theileria lestoquardi |
TheLes |
333 |
DNA |
| Theileria luwenshuni |
TheLuw |
431 |
DNA |
| Theileria spp. |
TheSpp |
220 |
DNA |
| Theileria velifera |
TheVel |
430 |
DNA |
| Tick-borne encephalitis virus (related) |
TBEV-rel |
405 |
RNA |
| Total Bacteria DNA |
TBD |
034 |
DNA |
| Toxoplasma gondii |
ToxGon |
171 |
DNA |
| Treponema denticola |
TreDen |
078 |
DNA |
| Treponema pallidum |
TrePal |
364 |
DNA |
| Trichomonas gallinae |
TriGal |
282 |
DNA |
| Trichomonas spp. |
TriSpp |
348 |
DNA |
| Trichomonas tenax |
TriTen |
362 |
DNA |
| Trichomonas vaginalis |
TriVag |
209 |
DNA |
| Tritrichomonas foetus |
TriFoe |
053 |
DNA |
| Trueperella pyogenes (syn. Arcanobacterium pyogenes) |
TruPyo |
230 |
DNA |
| Trypanosoma spp. |
TrySpp |
226 |
DNA |
| Trypanosoma vivax |
TryViv |
241 |
DNA |
| Trypanozoon subgenus (T. evansi, T. brucei, T. equiperdum) |
TrySub |
225 |
DNA |
| UK-variant B.1.1.7 SARS-CoV-2 |
SARS-CoV-2 B.1.1.7 |
304 |
RNA |
| Ureaplasma diversum |
UreDiv |
084 |
DNA |
| Ureaplasma urealyticum |
UreUre |
118 |
DNA |
| Vancomicin resistance vanA |
VR-vanA |
402 |
DNA |
| Vancomicin resistance vanB |
VR-vanB |
403 |
DNA |
| Verticillium dahliae |
VerDah |
255 |
DNA |
| Vibrio cholerae |
VibCho |
049 |
DNA |
| Vibrio cholerae Tx |
VibChoTx |
024 |
DNA |
| Vibrio parahaemolyticus |
VibPar |
050 |
DNA |
| Vibrio spp. |
VibSpp |
177 |
DNA |
| Viral nervous necrosis |
VNN |
051 |
RNA |
| West Nile virus |
WNV |
145 |
RNA |
| White spot syndrome virus |
WSSV |
123 |
RNA |
| Xanthomonas campestris |
XanCam |
250 |
DNA |
| Xylella fastidiosa |
XylFas |
287 |
DNA |
| Yersinia enterocolitica |
YerEnt |
437 |
DNA |
| Zika virus |
ZIKV |
144 |
RNA |
